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BibTeX entries:
@ARTICLE{Kocán:20:Stability,
	 author = {Kocán, P. AND Matvija, P. AND Sobotík, P. AND Ošt’ádal, I. AND Pieczyrak, B. AND Jurczyszyn, L.},
	 title = {Stability of Partially Fluorinated Phthalocyanine Monolayers: Influence of Hydrogen Bonding Revisited},
	 journal = {J. Phys. Chem. C},
	 fulljournal = {The Journal of Physical Chemistry C},
	 volume = {124},
	 number = {3},
	 pages = {1973--1979},
	 year = {2020},
	 issn = {1932-7447},
	 doi = {10.1021/acs.jpcc.9b09723},
	 KFPPid = {2049},
}

@ARTICLE{Kocán:19:Self-ordering,
	 author = {Kocán, P. AND Pieczyrak, B. AND Jurczyszyn, L. AND Yoshimoto, Y. AND Yagyu, K. AND Tochihara, H. AND Suzuki, T.},
	 title = {Self-ordering of chemisorbed PTCDA molecules on Ge(001) driven by repulsive forces},
	 journal = {Phys. Chem. Chem. Phys.},
	 fulljournal = {Physical Chemistry Chemical Physics},
	 volume = {21},
	 number = {18},
	 pages = {9504--9511},
	 year = {2019},
	 issn = {1463-9076},
	 doi = {10.1039/C9CP01335K},
	 KFPPid = {1976},
}

@ARTICLE{Rozbořil:19:Self-assembly,
	 author = {Rozbořil, F. AND Ošťádal, I. AND Sobotík, P. AND Kocán, P.},
	 title = {Self-assembly of a two-dimensional molecular layer in a nonhomogeneous electric field: Kinetic Monte Carlo simulations},
	 journal = {Phys. Rev. E},
	 fulljournal = {PHYSICAL REVIEW E},
	 volume = {99},
	 number = {3},
	 pages = {032110},
	 eid = {032110},
	 year = {2019},
	 issn = {1063-651X},
	 doi = {10.1103/PhysRevE.99.032110},
	 KFPPid = {1944},
}

@ARTICLE{Zimmermann:19:Role,
	 author = {Zimmermann, P. AND Majer, K. AND Kocán, P. AND Ošťádal, I. AND Sobotík, P.},
	 title = {Role of Dangling Bond State Occupancy in Adsorption of Copper Phthalocyanine on Si(111)-Sn-√3 × √3},
	 journal = {J. Phys. Chem. C},
	 fulljournal = {The Journal of Physical Chemistry C},
	 volume = {123},
	 number = {26},
	 pages = {16232--16238},
	 year = {2019},
	 issn = {1932-7447},
	 doi = {10.1021/acs.jpcc.9b03624},
	 KFPPid = {1985},
}

@ARTICLE{Pieczyrak:19:Local,
	 author = {Pieczyrak, B. AND Jurczyszyn, L. AND Sobotík, P. AND Ošťádal, I. AND Kocán, P.},
	 title = {Local electronic structure of doping defects on Tl/Si(111)1x1},
	 journal = {Sci. Rep.},
	 fulljournal = {Scientific Reports},
	 volume = {9},
	 number = {Jan},
	 pages = {779},
	 eid = {779},
	 year = {2019},
	 issn = {2045-2322},
	 doi = {10.1038/s41598-018-37361-5},
	 KFPPid = {1935},
}

@ARTICLE{Sobotík:18:Anisotropic,
	 author = {Sobotík, P. AND Kocán, P. AND Ošťádal, I.},
	 title = {Anisotropic alloying: Formation of atomic scale trellis on the Si(100)-(2 × 1) surface},
	 journal = {Surf. Sci.},
	 fulljournal = {Surface Science},
	 volume = {677},
	 number = {},
	 pages = {8--11},
	 year = {2018},
	 issn = {0039-6028},
	 doi = {10.1016/j.susc.2018.05.010},
	 KFPPid = {1851},
}

@ARTICLE{Kocán:17:Adsorption,
	 author = {Kocán, P. AND Yoshimoto, Y. AND Yagyu, K. AND Tochihara, H. AND Suzuki, T.},
	 title = {Adsorption of PTCDA on Ge(001)},
	 journal = {J. Phys. Chem. C},
	 fulljournal = {JOURNAL OF PHYSICAL CHEMISTRY C},
	 volume = {121},
	 number = {6},
	 pages = {3320--3326},
	 year = {2017},
	 issn = {1932-7447},
	 doi = {10.1021/acs.jpcc.6b09793},
	 KFPPid = {1784},
}

@ARTICLE{Kučera:17:Analysis,
	 author = {Kučera, M. AND Kocán, P. AND Sobotík, P. AND Majer, K. AND Ošťádal, I.},
	 title = {Analysis of the Sn chain length fluctuations on Si(100)2x1: An extraction of microscopic parameters},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {96},
	 number = {4},
	 pages = {045430},
	 eid = {045430},
	 year = {2017},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.96.045430},
	 KFPPid = {1736},
}

@ARTICLE{Matvija:17:Pair,
	 author = {Matvija, P. AND Rozbořil, F. AND Sobotík, P. AND Ošťádal, I. AND Kocán, P.},
	 title = {Pair Correlation Function of a 2D Molecular Gas Directly Visualized by Scanning Tunneling Microscopy},
	 journal = {J. Phys. Chem. Lett.},
	 fulljournal = {Journal of Physical Chemistry Letters},
	 volume = {8},
	 number = {17},
	 pages = {4268--4272},
	 year = {2017},
	 issn = {1948-7185},
	 doi = {10.1021/acs.jpclett.7b01965},
	 KFPPid = {1738},
}

@ARTICLE{Matvija:17:Electric-field-controlled,
	 author = {Matvija, P. AND Rozbořil, F. AND Sobotík, P. AND Ošťádal, I. AND Pieczyrak, B. AND Jurczyszyn, L. AND Kocán, P.},
	 title = {Electric-field-controlled phase transition in a 2D molecular layer},
	 journal = {Sci. Rep.},
	 fulljournal = {Scientific Reports},
	 volume = {7},
	 number = {4 Aug},
	 pages = {7357},
	 eid = {7357},
	 year = {2017},
	 issn = {2045-2322},
	 doi = {10.1038/s41598-017-07277-7},
	 KFPPid = {1737},
}

@ARTICLE{Zimmermann:16:Adsorption,
	 author = {Zimmermann, P. AND Sobotík, P. AND Kocán, P. AND Ošt’ádal, I. AND Vorokhta, M. AND Acres, R.G. AND Matolín, V.},
	 title = {Adsorption of ethylene on Sn and In terminated Si(001) surface studied by photoelectron spectroscopy and scanning tunneling microscopy},
	 journal = {J. Chem. Phys.},
	 fulljournal = {JOURNAL OF CHEMICAL PHYSICS},
	 volume = {145},
	 number = {9},
	 pages = {094701},
	 eid = {094701},
	 year = {2016},
	 issn = {0021-9606},
	 doi = {10.1063/1.4961737},
	 KFPPid = {1638},
}

@ARTICLE{Krejčí:16:Chemisorption,
	 author = {Krejčí, O. AND Matvija, P. AND Zimmermann, P. AND Sobotík, P. AND Ošt’ádal, I. AND Kocán, P.},
	 title = {Chemisorption of Acetophenone on Si(111)-7 × 7. Polar Aromatic Molecule on Electronically Complex Surface},
	 journal = {J. Phys. Chem. C},
	 fulljournal = {JOURNAL OF PHYSICAL CHEMISTRY C},
	 volume = {120},
	 number = {17},
	 pages = {9200--9206},
	 year = {2016},
	 issn = {1932-7447},
	 doi = {10.1021/acs.jpcc.6b00486},
	 KFPPid = {1607},
}

@ARTICLE{Kocan:15:Anomalous,
	 author = {Kocan, P. AND Krejci, O. AND Tochihara, H.},
	 title = {Anomalous structural evolution and √3×√3 reconstruction of a clean Si(111) surface observed after thermal desorption of thallium},
	 journal = {J. Vac. Sci. Technol. A},
	 fulljournal = {JOURNAL OF VACUUM SCIENCE & TECHNOLOGY A},
	 volume = {33},
	 number = {2},
	 pages = {021408},
	 eid = {021408},
	 year = {2015},
	 issn = {0734-2101},
	 doi = {10.1116/1.4913199},
	 KFPPid = {1487},
}

@ARTICLE{Matvija:15:Diverse,
	 author = {Matvija, P. AND Sobotik, P. AND Ostadal, I. AND Kocan, P.},
	 title = {Diverse growth of Mn, In and Sn islands on thallium-passivated Si(1 1 1) surface},
	 journal = {Appl. Surf. Sci.},
	 fulljournal = {APPLIED SURFACE SCIENCE},
	 volume = {331},
	 number = {Mar},
	 pages = {339--345},
	 year = {2015},
	 issn = {0169-4332},
	 doi = {10.1016/j.apsusc.2015.01.067},
	 KFPPid = {1489},
}

@ARTICLE{Kocan:13:Desorption-induced,
	 author = {Kocan, P. AND Sobotik, P. AND Ostadal, I.},
	 title = {Desorption-induced structural changes of metal/Si(111) surfaces: Kinetic Monte Carlo simulations},
	 journal = {Phys. Rev. E},
	 fulljournal = {PHYSICAL REVIEW E},
	 volume = {88},
	 number = {2},
	 pages = {022403},
	 eid = {022403},
	 year = {2013},
	 issn = {1539-3755},
	 doi = {10.1103/PhysRevE.88.022403},
	 KFPPid = {1342},
}

@ARTICLE{Sobotik:13:Emergence,
	 author = {Sobotik, P. AND Setvin, M. AND Zimmermann, P. AND Kocan, P. AND Ostadal, I. AND Mutombo, P. AND Ondracek, M. AND Jelinek, P.},
	 title = {Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {88},
	 number = {20},
	 pages = {205406},
	 eid = {205406},
	 year = {2013},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.88.205406},
	 KFPPid = {1352},
}

@ARTICLE{Kocan:12:An,
	 author = {Kocan, P. AND Sobotik, P. AND Matvija, P. AND Setvin, M. AND Ostadal, I.},
	 title = {An STM study of desorption-induced thallium structures on the Si(111) surface},
	 journal = {Surf. Sci.},
	 fulljournal = {SURFACE SCIENCE},
	 volume = {606},
	 number = {13-14},
	 pages = {991--995},
	 year = {2012},
	 issn = {0039-6028},
	 doi = {10.1016/j.susc.2011.12.016},
	 KFPPid = {1240},
}

@ARTICLE{Setvin:12:Competition,
	 author = {Setvin, M. AND Javorsky, J. AND Majzik, Z. AND Sobotik, P. AND Kocan, P. AND Ostadal, I. .},
	 title = {Competition between thermally activated and tip-induced hopping of indium atoms on Si(100)},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {85},
	 number = {8},
	 pages = {081403(R)},
	 eid = {081403(R)},
	 year = {2012},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.85.081403},
	 KFPPid = {1230},
}

@ARTICLE{Setvin:12:Ultrasharp,
	 author = {Setvin, M. AND Javorsky, J. AND Turcinkova, D. AND Matolinova, I. AND Sobotik, P. AND Kocan, P. AND Ostadal, I.},
	 title = {Ultrasharp tungsten tips—characterization and nondestructive cleaning},
	 journal = {Ultramicroscopy},
	 fulljournal = {ULTRAMICROSCOPY},
	 volume = {113},
	 number = {2},
	 pages = {152--157},
	 year = {2012},
	 issn = {0304-3991},
	 doi = {10.1016/j.ultramic.2011.10.005},
	 KFPPid = {1198},
}

@ARTICLE{Kocan:11:Metallic-like,
	 author = {Kocan, P. AND Sobotik, P. AND Ostadal, I.},
	 title = {Metallic-like thallium overlayer on a Si(111) surface},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {84},
	 number = {23},
	 pages = {233304},
	 eid = {233304},
	 year = {2011},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.84.233304},
	 KFPPid = {1199},
}

@ARTICLE{Sobotik:10:Local,
	 author = {Sobotik, P. AND Ostadal, I. AND Kocan, P.},
	 title = {Local electronic structure of the Si(111)-(7 × 7) surface interacting with Ag atoms},
	 journal = {Surf. Sci.},
	 fulljournal = {SURFACE SCIENCE},
	 volume = {604},
	 number = {19-20},
	 pages = {1778--1783},
	 year = {2010},
	 issn = {0039-6028},
	 doi = {10.1016/j.susc.2010.07.004},
	 KFPPid = {1021},
}

@ARTICLE{Kocan:09:Si,
	 author = {Kocan, P. AND Tochihara, H.},
	 title = {Si islands with 1 × 1 termination formed by desorption of Tl from Si(1 1 1) surface},
	 journal = {Appl. Surf. Sci.},
	 fulljournal = {APPLIED SURFACE SCIENCE},
	 volume = {256},
	 number = {4},
	 pages = {1168--1170},
	 year = {2009},
	 issn = {0169-4332},
	 doi = {10.1016/j.apsusc.2009.05.078},
	 KFPPid = {958},
}

@ARTICLE{Kocan:09:Modeling,
	 author = {Kocan, P. AND Sobotik, P. AND Ostadal, I. AND Setvin, M. AND Haviar, S.},
	 title = {Modeling growth of one-dimensional islands: Influence of reactive defects},
	 journal = {Phys. Rev. E},
	 fulljournal = {PHYSICAL REVIEW E},
	 volume = {80},
	 number = {6},
	 pages = {061603},
	 eid = {061603},
	 year = {2009},
	 issn = {1063-651X},
	 doi = {10.1103/PhysRevE.80.061603},
	 KFPPid = {959},
}

@ARTICLE{Higashi:09:Reactive,
	 author = {Higashi, S. AND Kocan, P. AND Tochihara, H.},
	 title = {Reactive epitaxial growth of MnSi ultrathin films on Si(111) by Mn deposition},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {79},
	 number = {20},
	 pages = {205312},
	 eid = {205312},
	 year = {2009},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.79.205312},
	 KFPPid = {951},
}

@ARTICLE{Kocan:08:Defects,
	 author = {Kocan, P. AND Jurczyszyn, L. AND Sobotik, P. AND Ostadal, I.},
	 title = {Defects on the Si(100)-2×1 surface: Anchoring sites of the surface polymerization reaction of In atoms},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {77},
	 number = {11},
	 pages = {113301},
	 eid = {113301},
	 year = {2008},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.77.113301},
	 KFPPid = {812},
}

@ARTICLE{Kocan:08:Magic,
	 author = {Kocan, P. AND Visikovskiy, A.V. AND Ohira, Y. AND Yoshimura, M. AND Ueda, K. AND Tochihara, H.},
	 title = {Magic clusters and (2×1) local structure formed in a half-unit cell of the Si(1 1 1)-(7×7) surface by Tl adsorption},
	 journal = {Appl. Surf. Sci.},
	 fulljournal = {APPLIED SURFACE SCIENCE},
	 volume = {254},
	 number = {23},
	 pages = {7647--7650},
	 year = {2008},
	 issn = {0169-4332},
	 doi = {10.1016/j.apsusc.2008.01.141},
	 KFPPid = {842},
}

@ARTICLE{Higashi:08:Epitaxially,
	 author = {Higashi, S. AND Ikedo, Y. AND Kocan, P. AND Tochihara, H.},
	 title = {Epitaxially grown flat MnSi ultrathin film on Si(111)},
	 journal = {Appl. Phys. Lett.},
	 fulljournal = {APPLIED PHYSICS LETTERS},
	 volume = {93},
	 number = {1},
	 pages = {013104},
	 eid = {013104},
	 year = {2008},
	 issn = {0003-6951},
	 doi = {10.1063/1.2952495},
	 KFPPid = {843},
}

@ARTICLE{Kocan:07:Stability,
	 author = {Kocan, P. AND Sobotik, P. AND Ostadal, I. AND Javorsky, J. AND Setvin, M.},
	 title = {Stability of In rows on Si(100) during STM observation},
	 journal = {Surf. Sci.},
	 fulljournal = {SURFACE SCIENCE},
	 volume = {601},
	 number = {18},
	 pages = {4506--4509},
	 year = {2007},
	 issn = {0039-6028},
	 doi = {10.1016/j.susc.2007.04.132},
	 KFPPid = {759},
}

@ARTICLE{Kocan:06:Role,
	 author = {Kocan, P. AND Sobotik, P. AND Ostadal, I.},
	 title = {Role of surface defects in room-temperature growth of metals on Si(100)2 x 1},
	 journal = {Czech. J. Phys.},
	 fulljournal = {CZECHOSLOVAK JOURNAL OF PHYSICS},
	 volume = {56},
	 number = {1},
	 pages = {27--32},
	 year = {2006},
	 issn = {0011-4626},
	 doi = {10.1007/s10582-006-0062-1},
	 KFPPid = {674},
}

@ARTICLE{Kocan:06:Comment,
	 author = {Kocan, P. AND Sobotik, P. AND Ostadal, I.},
	 title = {Comment on "Monotonically decreasing size distributions for one-dimensional Ga rows on Si(100)"},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {74},
	 number = {3},
	 pages = {037401},
	 eid = {037401},
	 year = {2006},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.74.037401},
	 KFPPid = {648},
}

@ARTICLE{Kocan:06:Growth,
	 author = {Kocan, P. AND Ostadal, I. AND Sobotik, P.},
	 title = {Growth of silver structures on silicon surfaces observed in vivo by scanning tunneling microscopy},
	 journal = {Surf. Sci.},
	 fulljournal = {SURFACE SCIENCE},
	 volume = {600},
	 number = {18},
	 pages = {3928--3931},
	 year = {2006},
	 issn = {0039-6028},
	 doi = {10.1016/j.susc.2006.01.103},
	 KFPPid = {618},
}

@ARTICLE{Ostadal:06:Early,
	 author = {Ostadal, I. AND Kocan, P. AND Sobotik, P. AND Pudl, J.},
	 title = {Early stages of submonolayer growth of Ag on Si(111) 7 x 7 observed by scanning tunneling microscopy in vivo},
	 journal = {Jpn. J. Appl. Phys.},
	 fulljournal = {JAPANESE JOURNAL OF APPLIED PHYSICS PART 1-REGULAR PAPERS BRIEF COMMUNICATIONS & REVIEW PAPERS},
	 volume = {45},
	 number = {3B},
	 pages = {2170--2174},
	 year = {2006},
	 issn = {0021-4922},
	 doi = {10.1143/JJAP.45.2170},
	 KFPPid = {672},
}

@ARTICLE{Ostadal:05:Direct,
	 author = {Ostadal, I. AND Kocan, P. AND Sobotik, P. AND Pudl, J.},
	 title = {Direct observation of long-range assisted formation of Ag clusters on Si(111)7x7},
	 journal = {Phys. Rev. Lett.},
	 fulljournal = {PHYSICAL REVIEW LETTERS},
	 volume = {95},
	 number = {14},
	 pages = {146101},
	 eid = {146101},
	 year = {2005},
	 issn = {0031-9007},
	 doi = {10.1103/PhysRevLett.95.146101},
	 KFPPid = {2},
}

@ARTICLE{Kocan:04:Continuous,
	 author = {Kocan, P. AND Sobotik, P. AND Ostadal, I. AND Kotrla, M.},
	 title = {Continuous and correlated nucleation during nonstandard island growth at Ag/Si(111)-7x7 heteroepitaxy},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {69},
	 number = {16},
	 pages = {165409},
	 eid = {165409},
	 year = {2004},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.69.165409},
	 KFPPid = {86},
}

@ARTICLE{Kocan:04:Self-organized,
	 author = {Kocan, P. AND Sobotik, P. AND Ostadal, I. AND Kotrla, M.},
	 title = {Self-organized growth of Ag islands on Si(111)-(7x7)-optimization of an STM experiment by means of KMC simulations},
	 journal = {Surf. Sci.},
	 fulljournal = {SURFACE SCIENCE},
	 volume = {566},
	 number = {},
	 pages = {216--220},
	 year = {2004},
	 issn = {0039-6028},
	 doi = {10.1016/j.susc.2004.06.133},
	 KFPPid = {64},
}

@ARTICLE{Kocan:04:Structural,
	 author = {Kocan, P. AND Ohtake, A. AND Koguchi, N.},
	 title = {Structural features of Ga-rich GaAs(001) surfaces: Scanning tunneling microscopy study},
	 journal = {Phys. Rev. B},
	 fulljournal = {PHYSICAL REVIEW B},
	 volume = {70},
	 number = {20},
	 pages = {201303},
	 eid = {201303},
	 year = {2004},
	 issn = {1098-0121},
	 doi = {10.1103/PhysRevB.70.201303},
	 KFPPid = {43},
}

@ARTICLE{Ohtake:04:Ga-rich,
	 author = {Ohtake, A. AND Kocan, P. AND Seino, K. AND Schmidt, W.G. AND Koguchi, N.},
	 title = {Ga-rich limit of surface reconstructions on GaAs(001): Atomic structure of the (4 x 6) phase},
	 journal = {Phys. Rev. Lett.},
	 fulljournal = {PHYSICAL REVIEW LETTERS},
	 volume = {93},
	 number = {26},
	 pages = {266101},
	 eid = {266101},
	 year = {2004},
	 issn = {0031-9007},
	 doi = {10.1103/PhysRevLett.93.266101},
	 KFPPid = {39},
}

@ARTICLE{Ohtake:04:Kinetics,
	 author = {Ohtake, A. AND Kocan, P. AND Nakamura, J. AND Natori, A. AND Koguchi, N.},
	 title = {Kinetics in surface reconstructions on GaAs(001)},
	 journal = {Phys. Rev. Lett.},
	 fulljournal = {PHYSICAL REVIEW LETTERS},
	 volume = {92},
	 number = {23},
	 pages = {236105},
	 eid = {236105},
	 year = {2004},
	 issn = {0031-9007},
	 doi = {10.1103/PhysRevLett.92.236105},
	 KFPPid = {85},
}

@ARTICLE{Sobotik:04:STM,
	 author = {Sobotik, P. AND Ostadal, I. AND Kocan, P.},
	 title = {STM observation of Ag adatom interactions on the Si(111)-(7 x 7) surface},
	 journal = {Vacuum},
	 fulljournal = {VACUUM},
	 volume = {76},
	 number = {4},
	 pages = {465--469},
	 year = {2004},
	 issn = {0042-207X},
	 doi = {10.1016/j.vacuum.2004.05.008},
	 KFPPid = {50},
}

@ARTICLE{Ostadal:03:Ag/Si(111)-(7,
	 author = {Ostadal, I. AND Kocan, P. AND Myslivecek, J. AND Sobotik, P.},
	 title = {Ag/Si(111)-(7 x 7) heteroepitaxy - STM experiment and KMC simulations},
	 journal = {Czech. J. Phys.},
	 fulljournal = {CZECHOSLOVAK JOURNAL OF PHYSICS},
	 volume = {53},
	 number = {1},
	 pages = {41--48},
	 year = {2003},
	 issn = {0011-4626},
	 doi = {10.1023/A:1022493503321},
	 KFPPid = {137},
}

@ARTICLE{Sobotik:03:Direct,
	 author = {Sobotik, P. AND Kocan, P. AND Ostadal, I.},
	 title = {Direct observation of Ag intercell hopping on the Si(111)-(7 x 7) surface},
	 journal = {Surf. Sci.},
	 fulljournal = {SURFACE SCIENCE},
	 volume = {537},
	 number = {1-3},
	 pages = {L442--L446},
	 year = {2003},
	 issn = {0039-6028},
	 doi = {10.1016/S0039-6028(03)00608-3},
	 KFPPid = {114},
}

@ARTICLE{Sobotik:03:Reconstruction-determined,
	 author = {Sobotik, P. AND Ostadal, I. AND Kocan, P. AND Myslivecek, J. AND Jarolimek, T.},
	 title = {Reconstruction-determined diffusion of Ag adatoms on the Si(111)-(7x7) surface},
	 journal = {Czech. J. Phys.},
	 fulljournal = {CZECHOSLOVAK JOURNAL OF PHYSICS},
	 volume = {53},
	 number = {1},
	 pages = {69--74},
	 year = {2003},
	 issn = {0011-4626},
	 doi = {10.1023/A:1022359705138},
	 KFPPid = {138},
}

@ARTICLE{Sobotik:02:Reconstruction,
	 author = {Sobotik, P. AND Ostadal, I. AND Kocan, P.},
	 title = {Reconstruction determined submonolayer growth of Ag on Si(111)-(7x7) surface},
	 journal = {Surf. Sci.},
	 fulljournal = {SURFACE SCIENCE},
	 volume = {507},
	 number = {},
	 pages = {389--393},
	 year = {2002},
	 issn = {0039-6028},
	 doi = {10.1016/S0039-6028(02)01275-X},
	 KFPPid = {176},
}


Bibitems:

\bibitem[{Kocán et~al.(2020)}]{Kocán:20:Stability}
Kocán, P., Matvija, P., Sobotík, P., Ošt’ádal, I., Pieczyrak, B., Jurczyszyn, L., Stability of Partially Fluorinated Phthalocyanine Monolayers: Influence of Hydrogen Bonding Revisited. {\it J. Phys. Chem. C.} {\bf 124}(3): 1973--1979, 2020.

\bibitem[{Kocán et~al.(2019)}]{Kocán:19:Self-ordering}
Kocán, P., Pieczyrak, B., Jurczyszyn, L., Yoshimoto, Y., Yagyu, K., Tochihara, H., Suzuki, T., Self-ordering of chemisorbed PTCDA molecules on Ge(001) driven by repulsive forces. {\it Phys. Chem. Chem. Phys.} {\bf 21}(18): 9504--9511, 2019.

\bibitem[{Rozbořil et~al.(2019)}]{Rozbořil:19:Self-assembly}
Rozbořil, F., Ošťádal, I., Sobotík, P., Kocán, P., Self-assembly of a two-dimensional molecular layer in a nonhomogeneous electric field: Kinetic Monte Carlo simulations. {\it Phys. Rev. E.} {\bf 99}(3): 032110, 2019.

\bibitem[{Zimmermann et~al.(2019)}]{Zimmermann:19:Role}
Zimmermann, P., Majer, K., Kocán, P., Ošťádal, I., Sobotík, P., Role of Dangling Bond State Occupancy in Adsorption of Copper Phthalocyanine on Si(111)-Sn-√3 × √3. {\it J. Phys. Chem. C.} {\bf 123}(26): 16232--16238, 2019.

\bibitem[{Pieczyrak et~al.(2019)}]{Pieczyrak:19:Local}
Pieczyrak, B., Jurczyszyn, L., Sobotík, P., Ošťádal, I., Kocán, P., Local electronic structure of doping defects on Tl/Si(111)1x1. {\it Sci. Rep.} {\bf 9}(Jan): 779, 2019.

\bibitem[{Sobotík et~al.(2018)}]{Sobotík:18:Anisotropic}
Sobotík, P., Kocán, P., Ošťádal, I., Anisotropic alloying: Formation of atomic scale trellis on the Si(100)-(2 × 1) surface. {\it Surf. Sci.} {\bf 677}: 8--11, 2018.

\bibitem[{Kocán et~al.(2017)}]{Kocán:17:Adsorption}
Kocán, P., Yoshimoto, Y., Yagyu, K., Tochihara, H., Suzuki, T., Adsorption of PTCDA on Ge(001). {\it J. Phys. Chem. C.} {\bf 121}(6): 3320--3326, 2017.

\bibitem[{Kučera et~al.(2017)}]{Kučera:17:Analysis}
Kučera, M., Kocán, P., Sobotík, P., Majer, K., Ošťádal, I., Analysis of the Sn chain length fluctuations on Si(100)2x1: An extraction of microscopic parameters. {\it Phys. Rev. B.} {\bf 96}(4): 045430, 2017.

\bibitem[{Matvija et~al.(2017)}]{Matvija:17:Pair}
Matvija, P., Rozbořil, F., Sobotík, P., Ošťádal, I., Kocán, P., Pair Correlation Function of a 2D Molecular Gas Directly Visualized by Scanning Tunneling Microscopy. {\it J. Phys. Chem. Lett.} {\bf 8}(17): 4268--4272, 2017.

\bibitem[{Matvija et~al.(2017)}]{Matvija:17:Electric-field-controlled}
Matvija, P., Rozbořil, F., Sobotík, P., Ošťádal, I., Pieczyrak, B., Jurczyszyn, L., Kocán, P., Electric-field-controlled phase transition in a 2D molecular layer. {\it Sci. Rep.} {\bf 7}(4 Aug): 7357, 2017.

\bibitem[{Zimmermann et~al.(2016)}]{Zimmermann:16:Adsorption}
Zimmermann, P., Sobotík, P., Kocán, P., Ošt’ádal, I., Vorokhta, M., Acres, R.G., Matolín, V., Adsorption of ethylene on Sn and In terminated Si(001) surface studied by photoelectron spectroscopy and scanning tunneling microscopy. {\it J. Chem. Phys.} {\bf 145}(9): 094701, 2016.

\bibitem[{Krejčí et~al.(2016)}]{Krejčí:16:Chemisorption}
Krejčí, O., Matvija, P., Zimmermann, P., Sobotík, P., Ošt’ádal, I., Kocán, P., Chemisorption of Acetophenone on Si(111)-7 × 7. Polar Aromatic Molecule on Electronically Complex Surface. {\it J. Phys. Chem. C.} {\bf 120}(17): 9200--9206, 2016.

\bibitem[{Kocan et~al.(2015)}]{Kocan:15:Anomalous}
Kocan, P., Krejci, O., Tochihara, H., Anomalous structural evolution and √3×√3 reconstruction of a clean Si(111) surface observed after thermal desorption of thallium. {\it J. Vac. Sci. Technol. A.} {\bf 33}(2): 021408, 2015.

\bibitem[{Matvija et~al.(2015)}]{Matvija:15:Diverse}
Matvija, P., Sobotik, P., Ostadal, I., Kocan, P., Diverse growth of Mn, In and Sn islands on thallium-passivated Si(1 1 1) surface. {\it Appl. Surf. Sci.} {\bf 331}(Mar): 339--345, 2015.

\bibitem[{Kocan et~al.(2013)}]{Kocan:13:Desorption-induced}
Kocan, P., Sobotik, P., Ostadal, I., Desorption-induced structural changes of metal/Si(111) surfaces: Kinetic Monte Carlo simulations. {\it Phys. Rev. E.} {\bf 88}(2): 022403, 2013.

\bibitem[{Sobotik et~al.(2013)}]{Sobotik:13:Emergence}
Sobotik, P., Setvin, M., Zimmermann, P., Kocan, P., Ostadal, I., Mutombo, P., Ondracek, M., Jelinek, P., Emergence of state at Fermi level due to the formation of In-Sn heterodimers on Si(100)-2×1. {\it Phys. Rev. B.} {\bf 88}(20): 205406, 2013.

\bibitem[{Kocan et~al.(2012)}]{Kocan:12:An}
Kocan, P., Sobotik, P., Matvija, P., Setvin, M., Ostadal, I., An STM study of desorption-induced thallium structures on the Si(111) surface. {\it Surf. Sci.} {\bf 606}(13-14): 991--995, 2012.

\bibitem[{Setvin et~al.(2012)}]{Setvin:12:Competition}
Setvin, M., Javorsky, J., Majzik, Z., Sobotik, P., Kocan, P., Ostadal, I. ., Competition between thermally activated and tip-induced hopping of indium atoms on Si(100). {\it Phys. Rev. B.} {\bf 85}(8): 081403(R), 2012.

\bibitem[{Setvin et~al.(2012)}]{Setvin:12:Ultrasharp}
Setvin, M., Javorsky, J., Turcinkova, D., Matolinova, I., Sobotik, P., Kocan, P., Ostadal, I., Ultrasharp tungsten tips—characterization and nondestructive cleaning. {\it Ultramicroscopy.} {\bf 113}(2): 152--157, 2012.

\bibitem[{Kocan et~al.(2011)}]{Kocan:11:Metallic-like}
Kocan, P., Sobotik, P., Ostadal, I., Metallic-like thallium overlayer on a Si(111) surface. {\it Phys. Rev. B.} {\bf 84}(23): 233304, 2011.

\bibitem[{Sobotik et~al.(2010)}]{Sobotik:10:Local}
Sobotik, P., Ostadal, I., Kocan, P., Local electronic structure of the Si(111)-(7 × 7) surface interacting with Ag atoms. {\it Surf. Sci.} {\bf 604}(19-20): 1778--1783, 2010.

\bibitem[{Kocan and Tochihara(2009)}]{Kocan:09:Si}
Kocan, P., Tochihara, H., Si islands with 1 × 1 termination formed by desorption of Tl from Si(1 1 1) surface. {\it Appl. Surf. Sci.} {\bf 256}(4): 1168--1170, 2009.

\bibitem[{Kocan et~al.(2009)}]{Kocan:09:Modeling}
Kocan, P., Sobotik, P., Ostadal, I., Setvin, M., Haviar, S., Modeling growth of one-dimensional islands: Influence of reactive defects. {\it Phys. Rev. E.} {\bf 80}(6): 061603, 2009.

\bibitem[{Higashi et~al.(2009)}]{Higashi:09:Reactive}
Higashi, S., Kocan, P., Tochihara, H., Reactive epitaxial growth of MnSi ultrathin films on Si(111) by Mn deposition. {\it Phys. Rev. B.} {\bf 79}(20): 205312, 2009.

\bibitem[{Kocan et~al.(2008)}]{Kocan:08:Defects}
Kocan, P., Jurczyszyn, L., Sobotik, P., Ostadal, I., Defects on the Si(100)-2×1 surface: Anchoring sites of the surface polymerization reaction of In atoms. {\it Phys. Rev. B.} {\bf 77}(11): 113301, 2008.

\bibitem[{Kocan et~al.(2008)}]{Kocan:08:Magic}
Kocan, P., Visikovskiy, A.V., Ohira, Y., Yoshimura, M., Ueda, K., Tochihara, H., Magic clusters and (2×1) local structure formed in a half-unit cell of the Si(1 1 1)-(7×7) surface by Tl adsorption. {\it Appl. Surf. Sci.} {\bf 254}(23): 7647--7650, 2008.

\bibitem[{Higashi et~al.(2008)}]{Higashi:08:Epitaxially}
Higashi, S., Ikedo, Y., Kocan, P., Tochihara, H., Epitaxially grown flat MnSi ultrathin film on Si(111). {\it Appl. Phys. Lett.} {\bf 93}(1): 013104, 2008.

\bibitem[{Kocan et~al.(2007)}]{Kocan:07:Stability}
Kocan, P., Sobotik, P., Ostadal, I., Javorsky, J., Setvin, M., Stability of In rows on Si(100) during STM observation. {\it Surf. Sci.} {\bf 601}(18): 4506--4509, 2007.

\bibitem[{Kocan et~al.(2006)}]{Kocan:06:Role}
Kocan, P., Sobotik, P., Ostadal, I., Role of surface defects in room-temperature growth of metals on Si(100)2 x 1. {\it Czech. J. Phys.} {\bf 56}(1): 27--32, 2006.

\bibitem[{Kocan et~al.(2006)}]{Kocan:06:Comment}
Kocan, P., Sobotik, P., Ostadal, I., Comment on "Monotonically decreasing size distributions for one-dimensional Ga rows on Si(100)". {\it Phys. Rev. B.} {\bf 74}(3): 037401, 2006.

\bibitem[{Kocan et~al.(2006)}]{Kocan:06:Growth}
Kocan, P., Ostadal, I., Sobotik, P., Growth of silver structures on silicon surfaces observed in vivo by scanning tunneling microscopy. {\it Surf. Sci.} {\bf 600}(18): 3928--3931, 2006.

\bibitem[{Ostadal et~al.(2006)}]{Ostadal:06:Early}
Ostadal, I., Kocan, P., Sobotik, P., Pudl, J., Early stages of submonolayer growth of Ag on Si(111) 7 x 7 observed by scanning tunneling microscopy in vivo. {\it Jpn. J. Appl. Phys.} {\bf 45}(3B): 2170--2174, 2006.

\bibitem[{Ostadal et~al.(2005)}]{Ostadal:05:Direct}
Ostadal, I., Kocan, P., Sobotik, P., Pudl, J., Direct observation of long-range assisted formation of Ag clusters on Si(111)7x7. {\it Phys. Rev. Lett.} {\bf 95}(14): 146101, 2005.

\bibitem[{Kocan et~al.(2004)}]{Kocan:04:Continuous}
Kocan, P., Sobotik, P., Ostadal, I., Kotrla, M., Continuous and correlated nucleation during nonstandard island growth at Ag/Si(111)-7x7 heteroepitaxy. {\it Phys. Rev. B.} {\bf 69}(16): 165409, 2004.

\bibitem[{Kocan et~al.(2004)}]{Kocan:04:Self-organized}
Kocan, P., Sobotik, P., Ostadal, I., Kotrla, M., Self-organized growth of Ag islands on Si(111)-(7x7)-optimization of an STM experiment by means of KMC simulations. {\it Surf. Sci.} {\bf 566}: 216--220, 2004.

\bibitem[{Kocan et~al.(2004)}]{Kocan:04:Structural}
Kocan, P., Ohtake, A., Koguchi, N., Structural features of Ga-rich GaAs(001) surfaces: Scanning tunneling microscopy study. {\it Phys. Rev. B.} {\bf 70}(20): 201303, 2004.

\bibitem[{Ohtake et~al.(2004)}]{Ohtake:04:Ga-rich}
Ohtake, A., Kocan, P., Seino, K., Schmidt, W.G., Koguchi, N., Ga-rich limit of surface reconstructions on GaAs(001): Atomic structure of the (4 x 6) phase. {\it Phys. Rev. Lett.} {\bf 93}(26): 266101, 2004.

\bibitem[{Ohtake et~al.(2004)}]{Ohtake:04:Kinetics}
Ohtake, A., Kocan, P., Nakamura, J., Natori, A., Koguchi, N., Kinetics in surface reconstructions on GaAs(001). {\it Phys. Rev. Lett.} {\bf 92}(23): 236105, 2004.

\bibitem[{Sobotik et~al.(2004)}]{Sobotik:04:STM}
Sobotik, P., Ostadal, I., Kocan, P., STM observation of Ag adatom interactions on the Si(111)-(7 x 7) surface. {\it Vacuum.} {\bf 76}(4): 465--469, 2004.

\bibitem[{Ostadal et~al.(2003)}]{Ostadal:03:Ag/Si(111)-(7}
Ostadal, I., Kocan, P., Myslivecek, J., Sobotik, P., Ag/Si(111)-(7 x 7) heteroepitaxy - STM experiment and KMC simulations. {\it Czech. J. Phys.} {\bf 53}(1): 41--48, 2003.

\bibitem[{Sobotik et~al.(2003)}]{Sobotik:03:Direct}
Sobotik, P., Kocan, P., Ostadal, I., Direct observation of Ag intercell hopping on the Si(111)-(7 x 7) surface. {\it Surf. Sci.} {\bf 537}(1-3): L442--L446, 2003.

\bibitem[{Sobotik et~al.(2003)}]{Sobotik:03:Reconstruction-determined}
Sobotik, P., Ostadal, I., Kocan, P., Myslivecek, J., Jarolimek, T., Reconstruction-determined diffusion of Ag adatoms on the Si(111)-(7x7) surface. {\it Czech. J. Phys.} {\bf 53}(1): 69--74, 2003.

\bibitem[{Sobotik et~al.(2002)}]{Sobotik:02:Reconstruction}
Sobotik, P., Ostadal, I., Kocan, P., Reconstruction determined submonolayer growth of Ag on Si(111)-(7x7) surface. {\it Surf. Sci.} {\bf 507}: 389--393, 2002.